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chore: dev to master #476

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merged 2 commits into from
Jun 11, 2024
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chore: dev to master #476

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1a829b1
test: jenkins test md5sums for main test
jonca79 Jun 11, 2024
9f59da2
Merge pull request #475 from genomic-medicine-sweden/update_cnv_check…
jonca79 Jun 11, 2024
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84 changes: 44 additions & 40 deletions .tests/jenkins/test_input_main.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -9,14 +9,14 @@ results/dna/HD827_T/additional_files/biomarker/HD827_T.purecn.scarhrd_cnvkit_sco
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results/dna/HD827_T/additional_files/cnv/HD827_T.manta_tumorSV.vcf.gz e29abf2c24120cd652bdf6c50b7aab12
results/dna/HD827_T/additional_files/cnv/HD827_T.pathology.amp_all_del_all.cnv_report.tsv cabe3be96550c2c8e86f8c4a1779de1f
results/dna/HD827_T/additional_files/cnv/HD827_T.pathology.amp_all_del_validated.cnv_report.tsv 244385d39ffe68fabe5068ae30df123f
results/dna/HD827_T/additional_files/cnv/HD827_T.pathology_purecn.amp_all_del_all.cnv_report.tsv 01660be1832c394b02e87e47e11afd9a
results/dna/HD827_T/additional_files/cnv/HD827_T.pathology_purecn.svdb_query.vcf c4c706c4a72e5d1ecbb3b990bb01b425
results/dna/HD827_T/additional_files/cnv/HD827_T.pathology.svdb_query.vcf 2c73b0b03c88250d4b33db47b3d626e8
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results/dna/HD827_T/additional_files/fusion/HD827_T.fuseq_wes.unfiltered.results.csv 3350bfff935006e7375301954261e468
results/dna/HD827_T/additional_files/qc/HD827_T.alignment_summary_metrics.txt 351f113346779003eae764ab6d16c5c4
results/dna/HD827_T/additional_files/qc/HD827_T.contamination.table 3c9511e7efab4fefd32144ff2ad19d19
Expand All @@ -32,24 +32,25 @@ results/dna/HD827_T/additional_files/vcf/vardict_HD827_T.vcf.gz 8654e74433b4550c
results/dna/HD827_T/biomarker/HD827_T.msisensor_pro.score.tsv 0f65c2525d900c36685c8a6e902e0f18
results/dna/HD827_T/biomarker/HD827_T.pathology_purecn.scarhrd_cnvkit_score.txt 01d2c284e52f514668a1cd55dfc3e972
results/dna/HD827_T/biomarker/HD827_T.TMB.txt daaee4de560681775bff827c15a8bc9b
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results/dna/HD832_T/additional_files/qc/HD832_T.contamination.table 18bef22a4210099ec22b2444e6ac2482
Expand All @@ -65,24 +66,25 @@ results/dna/HD832_T/additional_files/vcf/vardict_HD832_T.vcf.gz e105f2145cd7ee18
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results/dna/NA12878_T/additional_files/qc/NA12878_T.contamination.table e2ab7189dcf7c8cfb1f0ac24ac8766dc
Expand All @@ -98,24 +100,25 @@ results/dna/NA12878_T/additional_files/vcf/vardict_NA12878_T.vcf.gz d4b82ab064af
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Expand All @@ -131,9 +134,10 @@ results/dna/VAL2022_T/additional_files/vcf/vardict_VAL2022_T.vcf.gz 330c1cde2dac
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