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1. ABC-Enhancer-Gene-Prediction ABC-Enhancer-Gene-Prediction Public

   Forked from broadinstitute/ABC-Enhancer-Gene-Prediction

   Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

   Python

2. ENCODE-cCREs ENCODE-cCREs Public

   Forked from weng-lab/ENCODE-cCREs

   Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements

   Shell

3. SAILER SAILER Public

   Forked from uci-cbcl/SAILER

   Jupyter Notebook

4. AtacWorks AtacWorks Public

   Forked from NVIDIA-Genomics-Research/AtacWorks

   Deep learning based processing of Atac-seq data

   Jupyter Notebook

5. weng-lab/SCREEN weng-lab/SCREEN Public

   JavaScript 8 2

6. epimap_vis epimap_vis Public

   Forked from cboix/epimap_vis

   Code for EpiMap data browser

   R