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justin13601 committed Sep 24, 2024
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"source": [
"# Task Examples\n",
"\n",
"Provided below are two examples of mortality prediction tasks that ACES could easily extract subject cohorts for. The configurations have been tested all the provided synthetic data in the repository (`sample_data/ <https://github.com/justin13601/ACES/tree/main/sample_data>`_), as well as the MIMIC-IV dataset loaded using MEDS & ESGPT (with very minor changes to the below predicate definition). The configuration files for both of these tasks are provided in the repository ([`sample_configs/`](https://github.com/justin13601/ACES/tree/main/sample_configs)), and cohorts can be extracted using the `aces-cli` tool:\n",
"Provided below are two examples of mortality prediction tasks that ACES could easily extract subject cohorts for. The configurations have been tested all the provided synthetic data in the repository (`[sample_data/](https://github.com/justin13601/ACES/tree/main/sample_data`), as well as the MIMIC-IV dataset loaded using MEDS & ESGPT (with very minor changes to the below predicate definition). The configuration files for both of these tasks are provided in the repository ([sample_configs/](https://github.com/justin13601/ACES/tree/main/sample_configs)), and cohorts can be extracted using the `aces-cli` tool:\n",
"\n",
"```bash\n",
"aces-cli data.path='/path/to/MIMIC/ESGPT/schema/' data.standard='esgpt' cohort_dir='sample_configs/' cohort_name='...'\n",
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