Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix script to run examples locally #285

Open
wants to merge 6 commits into
base: master
Choose a base branch
from
Open

Fix script to run examples locally #285

Changes from 1 commit
Commits
Show all changes
6 commits
Select commit Hold shift + click to select a range
788158f
Fix script to run examples locally
cniethammer Feb 8, 2024
ad059f4
Improve run script for local example execution
cniethammer Dec 8, 2024
55b3f3b
Update examples/run-examples.sh
cniethammer Dec 9, 2024
f43bf95
Use basename to determine program name
cniethammer Dec 9, 2024
a07d2ab
Fix incorrect variable assignments
cniethammer Dec 13, 2024
057f8e5
Comment default arguments that are specific to Open MPI
cniethammer Dec 13, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
26 changes: 16 additions & 10 deletions examples/run-examples.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,33 +1,39 @@
#!/bin/bash
# Testscript running all examples from example-list.txt
#
# Copyright (c) 2017 Christoph Niethammer <[email protected]>
# Copyright (c) 2017-2024 Christoph Niethammer <[email protected]>
#

MARDYN_EXE="mpirun -np 1 $PWD/../src/MarDyn"
MARDYN_EXE="mpirun -np 2 $PWD/../src/MarDyn"
MARDYN_OPTIONS="--steps 10 -v"
EXAMPLE_LIST_FILE=${EXAMPLE_LIST_FILE:=example-list.txt}
LOGFILE=${LOGFILE:=$PWD/run-examples.log}
cniethammer marked this conversation as resolved.
Show resolved Hide resolved

#mapfile -t all_examples < $EXAMPLE_LIST_FILE # requires bash4 ...
declare -a all_examples
while IFS= read -r; do all_examples+=("$REPLY"); done < $EXAMPLE_LIST_FILE

all_examples=()
failed_examples=()

# definitions for esear color output to display
while IFS= read -r line ; do
[[ "$line" =~ ^#.*$ ]] && continue
[[ "$line" =~ ^$ ]] && continue
cniethammer marked this conversation as resolved.
Show resolved Hide resolved

example="$line"
echo "Going to run example file $example"
all_examples+=("$example")
done < "$EXAMPLE_LIST_FILE"


# definitions for easy color output
Color_Off='\e[0m' # Text Reset
IGreen='\e[0;92m' # Intense Green
IRed='\e[0;91m' # Intense Red
IMagenta='\e[0;95m' # magenta

logfile=$LOGFILE
date > $logfile
for example in ${all_examples[@]}
do
for example in ${all_examples[@]} ; do
example_dir=$(dirname $example)
example_inp_file=$(basename $example)
echo -e -n "Running example ${IMagenta}$example_inp_file${Color_Off} in $example_dir ... "
echo -e -n "Running example ${IMagenta}$example_inp_file${Color_Off} in ${IMagenta}$example_dir${Color_Off} ... "
echo "Running example $example_inp_file in $example_dir" >> $logfile
pushd "$example_dir" >/dev/null
cmd="$MARDYN_EXE $MARDYN_OPTIONS $example_inp_file"
Expand Down
Loading