5.4.0 Release Notes

What's Changed

• Update Npgsql and cleanup by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/709
• Mitigate DiskFull failures in subsequent tasks after docker image failures by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/711
• Move to 1.1.0 TES spec compliance by @vsmalladi in https://github.com/microsoft/ga4gh-tes/pull/653
• Pursue more efficient effective intra-task compute node cleanup by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/712
• Add convenient initialization of TesClient with a TesCredentials by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/718
• Address exit code 127 task failures after task's successful completion by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/719
• Set AzureCloudName when deploying upgrades when not previously set by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/722
• Configure Task MaxWallClockTime separately from Pool lifetime by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/724
• Bump Azure.Identity from 1.11.2 to 1.11.4 by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/725
• Fix default serialization by @vsmalladi in https://github.com/microsoft/ga4gh-tes/pull/664
• Retry docker pulls when GCR returns "NotFound" (workaround for GCR error) by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/726
• Handle OperationNotAllowed during upgrade by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/727
• Fix merge error preventing ejection of pools under quota pressure by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/730
• Fix exception thrown in AddProcessLogsIfAvailable by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/731
• [728-1] Runner calculates MD5 checksum for uploads. by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/729
• [728-2-2] Enable setting Content-MD5 for TES outputs by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/733
• Upload task outputs and metrics by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/734
• Call the runner directly from the task command-line by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/735
• Fix build break due to automatic GitHub merge by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/737
• Prevent previous docker pull from breaking the next task on the compute node by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/732
• Attempt to reduce deployment failures due to ingress configuration delays by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/739
• Propagate container status exit code by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/749
• Fix failure to overwrite blobs by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/750
• Propagate the container result code by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/752
• Return subprocess exit code by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/753
• Remove dependency on env var AzureServicesAuthConnectionString in Terra deployments by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/755

Full Changelog: https://github.com/microsoft/ga4gh-tes/compare/5.3.3...5.4.0