Merge branch 'release/0.3.0'

.coveragerc

@@ -1,4 +1,5 @@
 [run]
+relative_files = True
 source = pyrolite
 omit =
     # Omit test, docs, draft and data files
@@ -8,7 +9,6 @@ omit =
     draft/*
 
     # Omit extensions with extra dependencies
-    pyrolite/util/wfs.py
     pyrolite/util/database.py
 
     # Ignore _version.py

.github/workflows/docstest.yml

@@ -0,0 +1,43 @@
+name: DocsTest
+
+on:
+  push:
+  pull_request:
+    branches:
+    - develop
+  schedule:
+    - cron: '0 0 * * 0' # weekly
+
+jobs:
+  build:
+    name: Build Docs
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        python-version: [3.7, 3.8]
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Get pip cache dir
+        id: pip-cache-dir
+        run: |
+          echo "::set-output name=dir::$(pip cache dir)"
+      - name: pip cache
+        id: pip-cache
+        uses: actions/cache@v2
+        with:
+          path: ${{ steps.pip-cache-dir.outputs.dir }}
+          key: ${{ runner.os }}-pip-${{ hashFiles('setup.py') }}
+          restore-keys: |
+            ${{ runner.os }}-pip-
+      - name: Python Packages Install
+        run: |
+          python -m pip install --upgrade pip  # upgrade pip
+          pip install wheel
+          pip install .[skl,stats,docs]
+      - name: Build
+        run: |
+          cd docs && make html

.github/workflows/unittest.yml

@@ -0,0 +1,83 @@
+name: Unittest
+
+on:
+  push:
+  pull_request:
+    branches:
+    - develop
+  schedule:
+    - cron: '0 0 * * 0' # weekly
+
+jobs:
+  unit_tests:
+    name: Unit Tests
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+        python-version: [3.6, 3.7, 3.8]
+        exclude:
+        # excludes py38 on macOS, which seems to stall currently
+        - os: macos-latest
+          python-version: 3.8
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Get pip cache dir
+        id: pip-cache-dir
+        run: |
+          echo "::set-output name=dir::$(pip cache dir)"
+      - name: pip cache
+        id: pip-cache
+        uses: actions/cache@v2
+        with:
+          path: ${{ steps.pip-cache-dir.outputs.dir }}
+          key: ${{ runner.os }}-pip-${{ hashFiles('setup.py') }}
+          restore-keys: |
+            ${{ runner.os }}-pip-
+      - name: Python Packages Install
+        run: |
+          python -m pip install --upgrade pip  # upgrade pip
+          pip install wheel
+          pip install -q pytest pytest-runner pytest-cov coverage codacy-coverage
+          pip install coveralls
+          pip install .[skl,stats]
+      - name: Test Windows
+        if: runner.os == 'Windows'
+        env:
+          MPLBACKEND: Agg
+        run: python setup.py test
+      - name: Test MacOS
+        if: runner.os == 'macOS'
+        run: python setup.py test
+      - name: Prep Linux
+        if: runner.os == 'Linux'
+        run: |
+          sudo apt-get install jq curl    # codacy requirement
+          sudo apt-get install xvfb
+      - name: Test Linux
+        if: runner.os == 'Linux'
+        run: |
+          xvfb-run python setup.py test
+      - name: Coveralls
+        env:
+          COVERALLS_SERVICE_NAME: github
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COVERALLS_FLAG_NAME: ${{ matrix.test-name }}
+          COVERALLS_PARALLEL: true
+        run: |
+            coveralls
+  coveralls:
+    name: Indicate completion to coveralls.io
+    needs: unit_tests
+    runs-on: ubuntu-latest
+    container: python:3-slim
+    steps:
+    - name: Finished
+      run: |
+        pip3 install --upgrade coveralls
+        coveralls --finish
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

README.md

@@ -66,7 +66,7 @@ If you use pyrolite extensively for your research, citation of the software woul
 
 |                                                                                  **master**                                                                                  |                                                                                  **develop**                                                                                   |
 |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------:|
-|                     [![Build Status](https://travis-ci.org/morganjwilliams/pyrolite.svg?branch=master)](https://travis-ci.org/morganjwilliams/pyrolite)                      |                      [![Build Status](https://travis-ci.org/morganjwilliams/pyrolite.svg?branch=develop)](https://travis-ci.org/morganjwilliams/pyrolite)                      |
+|                               [![Unit Tests on Master](https://github.com/morganjwilliams/pyrolite/workflows/Unittest/badge.svg?branch=master)](https://github.com/morganjwilliams/pyrolite/actions?query=workflow:Unittest+branch:master)                                |                               [![Unit Tests on Develop](https://github.com/morganjwilliams/pyrolite/workflows/Unittest/badge.svg?branch=develop)](https://github.com/morganjwilliams/pyrolite/actions?query=workflow:Unittest+branch:develop)                                |
 | [![Coverage Status](https://coveralls.io/repos/github/morganjwilliams/pyrolite/badge.svg?branch=master)](https://coveralls.io/github/morganjwilliams/pyrolite?branch=master) | [![Coverage Status](https://coveralls.io/repos/github/morganjwilliams/pyrolite/badge.svg?branch=develop)](https://coveralls.io/github/morganjwilliams/pyrolite?branch=develop) |
 
 **Maintainer**: Morgan Williams (morgan.williams _at_ csiro.au)

docs/docs_require.txt

@@ -1 +1 @@
--e .[docs,skl]
+.[docs,skl]

docs/source/api/API.rst

@@ -83,6 +83,8 @@ pyrolite\.util
     util/lambdas
     util/distributions
     util/synthetic
+    util/spatial
+    util/resampling
     util/missing
     util/units
     util/types

docs/source/api/util/lambdas.rst

@@ -1,5 +1,46 @@
+
 pyrolite\.util\.lambdas
 -------------------------------
   .. automodule:: pyrolite.util.lambdas
       :members:
       :undoc-members:
+
+pyrolite\.util\.lambdas\.params
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  .. automodule:: pyrolite.util.lambdas.params
+      :members:
+      :undoc-members:
+
+
+pyrolite\.util\.lambdas\.eval
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  .. automodule:: pyrolite.util.lambdas.eval
+      :members:
+      :undoc-members:
+
+
+pyrolite\.util\.lambdas\.oneill
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  .. automodule:: pyrolite.util.lambdas.oneill
+      :members:
+      :undoc-members:
+
+
+pyrolite\.util\.lambdas\.opt
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  .. automodule:: pyrolite.util.lambdas.opt
+      :members:
+      :undoc-members:
+
+
+pyrolite\.util\.lambdas\.plot
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  .. automodule:: pyrolite.util.lambdas.plot
+      :members:
+      :undoc-members:
+
+pyrolite\.util\.lambdas\.transform
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+  .. automodule:: pyrolite.util.lambdas.transform
+      :members:
+      :undoc-members:

docs/source/api/util/resampling.rst

@@ -0,0 +1,5 @@
+pyrolite\.util\.resampling
+-------------------------------
+  .. automodule:: pyrolite.util.resampling
+      :members:
+      :undoc-members:

docs/source/api/util/spatial.rst

@@ -0,0 +1,5 @@
+pyrolite\.util\.spatial
+-------------------------------
+  .. automodule:: pyrolite.util.spatial
+      :members:
+      :undoc-members: