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Remove Strelka tumor-only somatic variant calling #85

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Remove Strelka tumor-only somatic variant calling

Remove Strelka tumor-only somatic variant calling #85

Re-run triggered October 29, 2024 11:16
@maxulyssemaxulysse
#1709
nevinwu:dev
Status Failure
Total duration 16m 10s
Artifacts –

pytest.yml

on: pull_request
Check for changes (pytest)
4s
Check for changes (pytest)
Matrix: pytest
confirm-pass
0s
confirm-pass
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4 errors and 3 warnings
strelka docker NF 24.04.2
Process returned exit code 1 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 10:29:50 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 10:41:41 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 10:52:31 GMT+0000 (Coordinated Universal Time)
strelka docker NF latest-everything
Process returned exit code 1 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 10:30:34 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 10:42:10 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 10:52:53 GMT+0000 (Coordinated Universal Time)
controlfreec docker NF latest-everything
Process returned exit code 1 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 11:18:43 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 11:24:15 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 11:28:03 GMT+0000 (Coordinated Universal Time)
confirm-pass
Process completed with exit code 1.
strelka docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
strelka docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
controlfreec docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.