Skip to content

Pull requests: nf-core/sarek

New pull request New
34 Open 965 Closed
34 Open 965 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Add spring and ubam files to overview pictures
#1734 opened Nov 15, 2024 by FriederikeHanssen Loading…
11 tasks
1
Use original QC values for Deepvariant after BQSR
#1733 opened Nov 15, 2024 by FriederikeHanssen Loading…
11 tasks
1
Migrate controlfreec pytest to nf-test
#1731 opened Nov 14, 2024 by maxulysse Loading…
11 tasks
7
ci: Remove pytest-workflow
#1729 opened Nov 8, 2024 by edmundmiller • Draft
@edmundmiller
1
WIP Internal Benchmarking
#1721 opened Nov 1, 2024 by famosab • Draft
11 tasks
6
Support for PureCN
#1710 opened Oct 29, 2024 by lbeltrame • Draft
3 of 14 tasks
@lbeltrame
4
Add full test report
#1701 opened Oct 28, 2024 by edmundmiller • Draft
11 tasks
1
@maxulysse @edmundmiller
2
FEAT: Auto CHANGELOG GHA
#1688 opened Oct 14, 2024 by maxulysse • Draft
2
Sarek bcftools normalization
#1682 opened Oct 9, 2024 by Patricie34 Loading…
3 of 11 tasks
23
Try to simplify params.tools usage
#1667 opened Sep 30, 2024 by maxulysse Loading…
11 tasks
1
[DRAFT] Add telseq "a software that estimates telomere length "
#1665 opened Sep 26, 2024 by lindenb Loading…
6 of 11 tasks
Add deepsomatic tool
#1647 opened Sep 10, 2024 by vaxyzek • Draft
11 tasks
2
Asmultipcf implementation for multi-sample ASCAT CNV calling
#1646 opened Sep 4, 2024 by alexanderchang1 Loading…
8 tasks done
Identified a WES ASCAT Error and updated documentation
#1638 opened Aug 29, 2024 by alexanderchang1 Loading…
2 tasks done
4
Fix: Update variant calling tool - data type table in docs
#1635 opened Aug 28, 2024 by famosab Loading…
2 of 11 tasks
1
5
added indexcov : finding large INDEL using the BAI index
#1613 opened Aug 5, 2024 by lindenb Loading…
8 of 10 tasks
24
add_dysgu_sarek
#1590 opened Jul 11, 2024 by poddarharsh15 Loading…
11 tasks
14
increase memory for fgbio
#1584 opened Jul 9, 2024 by bounlu Loading…
3 of 11 tasks
3
vardictjava variant calling workflow
#1582 opened Jul 3, 2024 by eolaniru Loading…
11 tasks
13
Update Sentieon Docs
#1579 opened Jul 1, 2024 by edmundmiller Loading…
@edmundmiller
4
Split variantannotation in its own pipeline and import it
#1561 opened Jun 11, 2024 by maxulysse Loading…
11 tasks
7
WIP: Add sentieon tnseq
#1497 opened May 3, 2024 by SPPearce • Draft
1
Added Minimap2 alignment
#1486 opened Apr 25, 2024 by EgorGuga Loading…
8 of 10 tasks
9
Add module bcftools/norm to sarek (in progress)
#1483 opened Apr 25, 2024 by JC-Delmas Loading…
1 of 11 tasks
16
Sambamba
#1368 opened Dec 29, 2023 by stavgrossfeld • Draft
10 tasks
2
ProTip! What’s not been updated in a month: updated:<2024-10-18.