Skip to content
nf-core CI

WIP: Add sentieon tnseq #5921

Sign in to view logs

WIP: Add sentieon tnseq

WIP: Add sentieon tnseq #5921

Run time

Learn about OS pricing on GitHub Actions
Job Run time
Check for changes (nf-test)
8s
Check for changes (pytest)
4s
default docker NF 23.04.0
6m 51s
default docker NF latest-everything
7m 2s
tumor_normal_pair docker NF 23.04.0
5m 12s
tumor_normal_pair docker NF latest-everything
5m 51s
save_mapped_only docker NF 23.04.0
6m 58s
save_mapped_only docker NF latest-everything
5m 22s
save_output_as_bam_only docker NF 23.04.0
5m 49s
save_output_as_bam_only docker NF latest-everything
6m 5s
skip_all_qc docker NF 23.04.0
5m 11s
skip_all_qc docker NF latest-everything
4m 46s
skip_markduplicates docker NF 23.04.0
9m 58s
skip_markduplicates docker NF latest-everything
10m 17s
validation_checks docker NF 23.04.0
3m 3s
validation_checks docker NF latest-everything
3m 27s
alignment_to_fastq docker NF 23.04.0
4m 56s
alignment_to_fastq docker NF latest-everything
4m 57s
umi docker NF 23.04.0
8m 10s
umi docker NF latest-everything
6m 32s
fastp docker NF 23.04.0
8m 38s
fastp docker NF latest-everything
6m 58s
bwamem docker NF 23.04.0
6m 22s
bwamem docker NF latest-everything
8m 25s
bwamem2 docker NF 23.04.0
6m 33s
bwamem2 docker NF latest-everything
6m 39s
dragmap docker NF 23.04.0
6m 52s
dragmap docker NF latest-everything
6m 39s
gatk4/markduplicates docker NF 23.04.0
6m 54s
gatk4/markduplicates docker NF latest-everything
5m 44s
prepare_recalibration docker NF 23.04.0
7m 0s
prepare_recalibration docker NF latest-everything
8m 27s
recalibrate docker NF 23.04.0
8m 11s
recalibrate docker NF latest-everything
6m 3s
intervals docker NF 23.04.0
10m 33s
intervals docker NF latest-everything
11m 29s
gatk4spark docker NF 23.04.0
8m 6s
gatk4spark docker NF latest-everything
8m 12s
cnvkit docker NF 23.04.0
11m 22s
cnvkit docker NF latest-everything
10m 18s
controlfreec docker NF 23.04.0
11m 31s
controlfreec docker NF latest-everything
8m 28s
deepvariant docker NF 23.04.0
33m 53s
deepvariant docker NF latest-everything
33m 46s
freebayes docker NF 23.04.0
15m 33s
freebayes docker NF latest-everything
15m 9s
haplotypecaller docker NF 23.04.0
8m 16s
haplotypecaller docker NF latest-everything
6m 42s
haplotypecaller_skip_filter docker NF 23.04.0
6m 48s
haplotypecaller_skip_filter docker NF latest-everything
6m 56s
joint_germline docker NF 23.04.0
7m 54s
manta docker NF 23.04.0
9m 20s
manta docker NF latest-everything
9m 0s
mpileup docker NF 23.04.0
8m 22s
mpileup docker NF latest-everything
8m 29s
msisensorpro docker NF 23.04.0
7m 30s
msisensorpro docker NF latest-everything
5m 17s
mutect2 docker NF 23.04.0
14m 31s
mutect2 docker NF latest-everything
13m 26s
strelka docker NF 23.04.0
16m 45s
strelka docker NF latest-everything
17m 55s
strelka_bp docker NF 23.04.0
7m 37s
strelka_bp docker NF latest-everything
7m 45s
tiddit docker NF 23.04.0
8m 17s
tiddit docker NF latest-everything
6m 29s
concatenate_vcfs docker NF 23.04.0
8m 23s
concatenate_vcfs docker NF latest-everything
9m 0s
pipeline_sarek test,docker NF
6m 20s
confirm-pass
1s
9h 49m 27s