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added indexcov : finding large INDEL using the BAI index #1613

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added indexcov : finding large INDEL using the BAI index #1613

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Commits on Aug 5, 2024

  1. add indexcov

    @lindenb
    lindenb committed Aug 5, 2024
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  2. indexcov germline works

    @lindenb
    lindenb committed Aug 5, 2024
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  3. update README CHANGELOG

    @lindenb
    lindenb committed Aug 5, 2024
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  4. merge dev

    @lindenb
    lindenb committed Aug 5, 2024
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  5. merge into dev

    @lindenb
    lindenb committed Aug 5, 2024
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  6. fix modules

    @lindenb
    lindenb committed Aug 5, 2024
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  7. fix indent

    @lindenb
    lindenb committed Aug 5, 2024
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  8. fix CHANGELOG

    @lindenb
    lindenb committed Aug 5, 2024
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Commits on Aug 6, 2024

  1. [automated] Fix code linting

    @nf-core-bot
    nf-core-bot committed Aug 6, 2024
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Commits on Sep 2, 2024

  1. review for nf-core#1613

    @plu1087
    plu1087 committed Sep 2, 2024
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  2. add somatic; add indexcov in usage

    @lindenb
    lindenb committed Sep 2, 2024
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Commits on Sep 3, 2024

  1. multiqc for indexcov

    @lindenb
    lindenb committed Sep 3, 2024
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  2. Update docs/output.md 

    Co-authored-by: Maxime U Garcia <[email protected]>
    @lindenb @maxulysse
    lindenb and maxulysse authored Sep 3, 2024
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  3. Update README.md 

    Co-authored-by: Maxime U Garcia <[email protected]>
    @lindenb @maxulysse
    lindenb and maxulysse authored Sep 3, 2024
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  4. Update README.md 

    Co-authored-by: Maxime U Garcia <[email protected]>
    @lindenb @maxulysse
    lindenb and maxulysse authored Sep 3, 2024
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  5. Update docs/usage.md 

    Co-authored-by: Maxime U Garcia <[email protected]>
    @lindenb @maxulysse
    lindenb and maxulysse authored Sep 3, 2024
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  6. Update nextflow_schema.json 

    Co-authored-by: Maxime U Garcia <[email protected]>
    @lindenb @maxulysse
    lindenb and maxulysse authored Sep 3, 2024
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  7. Update docs/usage.md 

    Co-authored-by: Maxime U Garcia <[email protected]>
    @lindenb @maxulysse
    lindenb and maxulysse authored Sep 3, 2024
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Commits on Sep 13, 2024

  1. Merge branch 'dev' into pl_goleft

    @maxulysse
    maxulysse authored Sep 13, 2024
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  2. Update modules/local/samtools/reindex_bam/environment.yml 

    Co-authored-by: Maxime U Garcia <[email protected]>
    @lindenb @maxulysse
    lindenb and maxulysse authored Sep 13, 2024
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  3. apply nf-core#1613 (comment)

    @lindenb
    lindenb committed Sep 13, 2024
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Commits on Oct 4, 2024

  1. Merge branch 'dev' into pl_goleft

    @maxulysse
    maxulysse authored Oct 4, 2024
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