Updated for WS294.

obophenotype · Jul 1, 2024 · 5064086 · 5064086
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Showing 13 changed files with 15,783 additions and 15,925 deletions.
diff --git a/imports/ro_import.owl b/imports/ro_import.owl
diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl
diff --git a/src/ontology/reports/edges.tsv b/src/ontology/reports/edges.tsv
diff --git a/wbbt-base.json b/wbbt-base.json
diff --git a/wbbt-base.obo b/wbbt-base.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: wbbt/releases/2024-04-01/wbbt-base.owl
+data-version: wbbt/releases/2024-07-01/wbbt-base.owl
 date: 19:10:2018 10:30
 saved-by: raymond
 auto-generated-by: OBO-Edit 2.1-beta16

diff --git a/wbbt-base.owl b/wbbt-base.owl
@@ -11,7 +11,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbbt/wbbt-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbbt/releases/2024-04-01/wbbt-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbbt/releases/2024-07-01/wbbt-base.owl"/>
         <obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/WBbt_0000100"/>
         <dc:description>Ontology about the gross anatomy of the C. elegans</dc:description>
         <dc:title>C. elegans Gross Anatomy Ontology</dc:title>

diff --git a/wbbt-full.json b/wbbt-full.json
diff --git a/wbbt-full.obo b/wbbt-full.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: wbbt/releases/2024-04-01/wbbt-full.owl
+data-version: wbbt/releases/2024-07-01/wbbt-full.owl
 date: 19:10:2018 10:30
 saved-by: raymond
 auto-generated-by: OBO-Edit 2.1-beta16
@@ -47,7 +47,6 @@ name: process
 def: "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" []
 comment: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
 is_a: BFO:0000003 ! occurrent
-relationship: part_of BFO:0000015 ! process
 
 [Term]
 id: BFO:0000016
@@ -77,7 +76,6 @@ name: specifically dependent continuant
 def: "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])" []
 comment: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
 is_a: BFO:0000002 ! continuant
-relationship: BFO:0000051 BFO:0000020 ! has part characteristic
 relationship: part_of BFO:0000020 ! characteristic
 property_value: seeAlso https://github.com/OBOFoundry/COB/issues/65 xsd:string
 property_value: seeAlso https://github.com/oborel/obo-relations/pull/284 xsd:string
@@ -135,7 +133,6 @@ synonym: "single organism process" RELATED []
 synonym: "single-organism process" RELATED []
 xref: Wikipedia:Biological_process
 is_a: BFO:0000015 ! process
-relationship: BFO:0000051 GO:0003674 ! has part molecular_function
 created_by: jl
 creation_date: 2012-09-19T15:05:24Z
 
@@ -57434,7 +57431,6 @@ property_value: IAO:0000116 "A bearer can have many dependents, and its dependen
 property_value: IAO:0000118 "bearer_of" xsd:string
 property_value: IAO:0000118 "is bearer of" xsd:string
 property_value: RO:0001900 RO:0001901
-property_value: seeAlso https://github.com/oborel/obo-relations/pull/284 xsd:string
 range: BFO:0000020 ! characteristic
 is_inverse_functional: true
 
@@ -57463,7 +57459,6 @@ property_value: IAO:0000112 "this process has participant this input material (o
 property_value: IAO:0000116 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string
 property_value: IAO:0000118 "has_participant" xsd:string
 domain: BFO:0000003 ! occurrent
-domain: BFO:0000015 ! process
 range: BFO:0000002 ! continuant
 holds_over_chain: BFO:0000051 RO:0000057
 
@@ -58570,9 +58565,9 @@ id: RO:0017001
 name: device utilizes material
 def: "X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y." []
 synonym: "utilizes" BROAD []
+property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-9625-1899
+property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0003-2620-0345
 property_value: IAO:0000112 "A diagnostic testing device utilizes a specimen." xsd:string
-property_value: IAO:0000117 https://orcid.org/0000-0001-9625-1899
-property_value: IAO:0000117 https://orcid.org/0000-0003-2620-0345
 property_value: IAO:0000232 "A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input." xsd:string
 property_value: IAO:0000232 "See github ticket https://github.com/oborel/obo-relations/issues/497" xsd:string
 holds_over_chain: RO:0002215 RO:0002233