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pom: Some security version updates #TASK-4437 #304

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pom: Some security version updates #TASK-4437

pom: Some security version updates #TASK-4437 #304

Triggered via push December 11, 2023 16:21
@juanfeSanahujajuanfeSanahuja
pushed 15b3d59
TASK-4437
Status Failure
Total duration 8m 56s
Artifacts 1

task.yml

on: push
build  /  Build Java app
3m 13s
build / Build Java app
test  /  Test and push Sonar analysis
5m 24s
test / Test and push Sonar analysis
deploy-docker  /  Push Docker image
deploy-docker / Push Docker image
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14 errors
VcfStringAnnotatorTaskTest.testSampleDataKeepsOriginalOrder: cellbase-app/src/test/java/org/opencb/cellbase/app/cli/main/annotation/VcfStringAnnotatorTaskTest.java#L62
Found interface htsjdk.variant.variantcontext.Allele, but class was expected
ClinicalVariantBuilderTest.testVariant: cellbase-lib/src/test/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinicalVariantBuilderTest.java#L809
Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
VariantAnnotationCalculatorTest.testLicensedDataHgmdCosmicApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2061
Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
VariantAnnotationCalculatorTest.testLicensedDataHgmdSpliceAiApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2088
Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
VariantAnnotationCalculatorTest.testLicensedDataCosmicSpliceApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2115
Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
VariantAnnotationCalculatorTest.testLicensedDataSpliceApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2034
Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
VariantAnnotationCalculatorTest.testLicensedClinicalHGMDandCOSMICAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L1071
Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
VariantAnnotationCalculatorTest.testNoLicensedClinicalAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L1091
Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
VariantAnnotationCalculatorTest.testLicensedClinicalHGMDAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L1052
Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
VariantAnnotationCalculatorTest.testLicensedDataCosmicApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2007
Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
VariantAnnotationCalculatorTest.testLicensedDataUnisersalApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L1953
Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
VariantAnnotationCalculatorTest.testCytobandAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L808
Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
VariantAnnotationCalculatorTest.testLicensedDataHgmdApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L1980
Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
test / Test and push Sonar analysis
There were 13 failed tests

Artifacts

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Name Size
build-folder Expired
234 MB