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pom: Some security version updates #TASK-4437 #304

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pom: Some security version updates #TASK-4437

pom: Some security version updates #TASK-4437 #304

GitHub Actions / Surefire tests report failed Dec 11, 2023 in 0s

185 tests run, 106 skipped, 13 failed.

Annotations

Check failure on line 62 in cellbase-app/src/test/java/org/opencb/cellbase/app/cli/main/annotation/VcfStringAnnotatorTaskTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VcfStringAnnotatorTaskTest.testSampleDataKeepsOriginalOrder 

Found interface htsjdk.variant.variantcontext.Allele, but class was expected
Raw output 
java.lang.IncompatibleClassChangeError: Found interface htsjdk.variant.variantcontext.Allele, but class was expected
	at org.opencb.cellbase.app.cli.main.annotation.VcfStringAnnotatorTaskTest.testSampleDataKeepsOriginalOrder(VcfStringAnnotatorTaskTest.java:62)

Check failure on line 809 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinicalVariantBuilderTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

ClinicalVariantBuilderTest.testVariant 

Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
Raw output 
java.lang.IncompatibleClassChangeError: Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
	at org.opencb.cellbase.lib.builders.clinical.variant.ClinicalVariantBuilderTest.testVariant(ClinicalVariantBuilderTest.java:809)

Check failure on line 2061 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataHgmdCosmicApiKeyAnnotation 

Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
Raw output 
java.lang.IncompatibleClassChangeError: Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataHgmdCosmicApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2061)

Check failure on line 2088 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataHgmdSpliceAiApiKeyAnnotation 

Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
Raw output 
java.lang.IncompatibleClassChangeError: Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataHgmdSpliceAiApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2088)

Check failure on line 2115 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataCosmicSpliceApiKeyAnnotation 

Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
Raw output 
java.lang.IncompatibleClassChangeError: Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataCosmicSpliceApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2115)

Check failure on line 2034 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataSpliceApiKeyAnnotation 

Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
Raw output 
java.lang.IncompatibleClassChangeError: Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataSpliceApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2034)

Check failure on line 1071 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedClinicalHGMDandCOSMICAnnotation 

Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
Raw output 
java.lang.IncompatibleClassChangeError: Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedClinicalHGMDandCOSMICAnnotation(VariantAnnotationCalculatorTest.java:1071)

Check failure on line 1091 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testNoLicensedClinicalAnnotation 

Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
Raw output 
java.lang.IncompatibleClassChangeError: Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testNoLicensedClinicalAnnotation(VariantAnnotationCalculatorTest.java:1091)

Check failure on line 1052 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedClinicalHGMDAnnotation 

Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
Raw output 
java.lang.IncompatibleClassChangeError: Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedClinicalHGMDAnnotation(VariantAnnotationCalculatorTest.java:1052)

Check failure on line 2007 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataCosmicApiKeyAnnotation 

Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
Raw output 
java.lang.IncompatibleClassChangeError: Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataCosmicApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2007)

Check failure on line 1953 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataUnisersalApiKeyAnnotation 

Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
Raw output 
java.lang.IncompatibleClassChangeError: Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataUnisersalApiKeyAnnotation(VariantAnnotationCalculatorTest.java:1953)

Check failure on line 808 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testCytobandAnnotation 

Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
Raw output 
java.lang.IncompatibleClassChangeError: Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testCytobandAnnotation(VariantAnnotationCalculatorTest.java:808)

Check failure on line 1980 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataHgmdApiKeyAnnotation 

Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
Raw output 
java.lang.IncompatibleClassChangeError: Method 'boolean htsjdk.variant.variantcontext.Allele.wouldBeSymbolicAllele(byte[])' must be InterfaceMethodref constant
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataHgmdApiKeyAnnotation(VariantAnnotationCalculatorTest.java:1980)
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