Skip to content
CellBase Develop workflow

lib: filter contigs (only chromosomes) when processing PGS scores, #T… #354

Sign in to view logs

lib: filter contigs (only chromosomes) when processing PGS scores, #T…

lib: filter contigs (only chromosomes) when processing PGS scores, #T… #354

Triggered via push February 7, 2024 07:50
@jtarragajtarraga
pushed d9ad898
TASK-5387
Status Failure
Total duration 5m 49s
Artifacts 1

task.yml

on: push
build  /  Build Java app
2m 2s
build / Build Java app
test  /  Test and push Sonar analysis
3m 32s
test / Test and push Sonar analysis
deploy-docker  /  Push Docker image
deploy-docker / Push Docker image
Fit to window
Zoom out
Zoom in

Annotations

8 errors and 2 warnings
VariantAnnotationCalculatorTest.testLicensedDataHgmdCosmicApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2061
org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
VariantAnnotationCalculatorTest.testLicensedDataHgmdSpliceAiApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2088
org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
VariantAnnotationCalculatorTest.testLicensedDataCosmicSpliceApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2115
org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
VariantAnnotationCalculatorTest.testLicensedDataSpliceApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2034
org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
VariantAnnotationCalculatorTest.testLicensedDataCosmicApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L2007
org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
VariantAnnotationCalculatorTest.testLicensedDataUnisersalApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L1953
org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
VariantAnnotationCalculatorTest.testLicensedDataHgmdApiKeyAnnotation: cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java#L1980
org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
test / Test and push Sonar analysis
There were 7 failed tests
build / Build Java app
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test / Test and push Sonar analysis
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v3, scacap/action-surefire-report@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Artifacts

Produced during runtime
Name Size
build-folder Expired
232 MB