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lib: filter contigs (only chromosomes) when processing PGS scores, #T…

lib: filter contigs (only chromosomes) when processing PGS scores, #T… #354

GitHub Actions / Surefire tests report failed Feb 7, 2024 in 0s

185 tests run, 106 skipped, 7 failed.

Annotations

Check failure on line 2061 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataHgmdCosmicApiKeyAnnotation 

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
Raw output 
java.util.concurrent.ExecutionException: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataHgmdCosmicApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2061)
Caused by: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

Check failure on line 2088 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataHgmdSpliceAiApiKeyAnnotation 

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
Raw output 
java.util.concurrent.ExecutionException: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataHgmdSpliceAiApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2088)
Caused by: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

Check failure on line 2115 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataCosmicSpliceApiKeyAnnotation 

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
Raw output 
java.util.concurrent.ExecutionException: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataCosmicSpliceApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2115)
Caused by: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

Check failure on line 2034 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataSpliceApiKeyAnnotation 

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
Raw output 
java.util.concurrent.ExecutionException: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataSpliceApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2034)
Caused by: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

Check failure on line 2007 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataCosmicApiKeyAnnotation 

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
Raw output 
java.util.concurrent.ExecutionException: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataCosmicApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2007)
Caused by: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

Check failure on line 1953 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataUnisersalApiKeyAnnotation 

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
Raw output 
java.util.concurrent.ExecutionException: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataUnisersalApiKeyAnnotation(VariantAnnotationCalculatorTest.java:1953)
Caused by: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}

Check failure on line 1980 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataHgmdApiKeyAnnotation 

org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
Raw output 
java.util.concurrent.ExecutionException: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataHgmdApiKeyAnnotation(VariantAnnotationCalculatorTest.java:1980)
Caused by: org.opencb.cellbase.core.exception.CellBaseException: Data not found in release 1. {}
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