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23 Open 27 Closed
23 Open 27 Closed
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Issues list

Extracting Transcript-Level Counts from Single-Nuclei Data for DTE/DTU Analysis
#63 opened Jul 12, 2024 by AkilaRanjith
.h5ad file does not contain layers spliced and unspliced
#61 opened Apr 26, 2024 by mdu4003
2
Error: Number of files (1) does not match number of input files required by technology 10XV1 (3)
#60 opened Mar 9, 2024 by Gabrisfon
14
How to specify filtered barcodes to generate a loom file?
#59 opened Mar 1, 2024 by micosacak
Issue with kb count
#57 opened Jan 9, 2024 by lucasinchausti
3
Improving speed when running kb count
#55 opened Nov 6, 2023 by reetm09
3
Verifying status of "uniqueness" of alignments for single cell analysis
#54 opened Jul 17, 2023 by sknaack
Running time
#53 opened Jul 4, 2023 by BenjaminDEMAILLE
issue with pip install kb-python
#52 opened Mar 21, 2023 by dsmolina
how to implement EM using kb?
#51 opened Mar 17, 2023 by jc271828
2
Why is there a big difference between kallisto and cellranger count result？
#50 opened Feb 16, 2023 by aizhimin
6
How to get isoform counts for single cell RNA-seq data?
#48 opened Nov 2, 2022 by biopzhang
3
Recommendation for alignment visualization
#47 opened Oct 24, 2022 by jkniehaus
1
What should I do if the gene name is empty when I set "--cellranger" parm
#46 opened Oct 17, 2022 by dylenchang
kallisto bustools with reference transcriptome
#45 opened Sep 26, 2022 by MartaBenegas
5
SRA Downloads a Single FASTQ File for Paired-End Reads Which Is Not Compatible with Kallisto Workflow
#43 opened Jul 6, 2022 by erguntiryaki
RNA Velocity
#39 opened Jun 4, 2022 by FionaMoon
Required files for technology = smartseq2
#38 opened Jun 2, 2022 by ostkampp
3
Rhapsody addition?
#36 opened May 4, 2022 by theheking
3
Quantify ARC-v1 data
#35 opened Mar 23, 2022 by ChristopherBarrington
1
Different splice abundances than kb tutorial
#25 opened May 18, 2021 by carbycrab
mitochondrial gene filtering
#21 opened Mar 1, 2021 by AuroreCapillon
RNA isoform/alternative splicing analysis
#8 opened Apr 13, 2020 by grimwoo
5
ProTip! What’s not been updated in a month: updated:<2024-10-14.