dna-seq-benchmark v1.11.7

Bug Fixes

• Only append labels in first iteration of storage loop; calculate chi2 only on non empty feature matrix. (#96) (20a469a)
• restrict calls to reference contigs (#101) (0413580)

dna-seq-benchmark v1.11.6

Bug Fixes

• hide sort_index in results table (#94) (bb72674)

dna-seq-benchmark v1.11.5

Performance Improvements

• update to latest datvzrd (2ae57cc)

dna-seq-benchmark v1.11.4

Bug Fixes

• update to latest datavzrd wrappers (ba6b039)

dna-seq-benchmark v1.11.3

Bug Fixes

• fix f* calculation (#89) (1afb621)
• Split intersection with target region and normalize calls in separate rules. (#90) (795a82b)

dna-seq-benchmark v1.11.2

Performance Improvements

• update to latest datavzrd (includes sorting and column hiding) (#87) (182edbb)

dna-seq-benchmark v1.11.1

Bug Fixes

• fix F* calculation (#85) (e684a33)

dna-seq-benchmark v1.11.0

Features

• add F*-measure (#84) (92f4903)
• add seqc2 wgs and ffpe to presets (#82) (c475b0f)
• add version of benchmark as key in presets and include in report (#80) (111b4ec)
• offer download of datavzrd reports as excel (#81) (6f5055e)

dna-seq-benchmark v1.10.0

Features

• improve coverage stratification for datasets with high coverage (#75) (225113c)

Bug Fixes

• change bm names to adhere to naming scheme in pm4onco (#78) (20ad65e)

dna-seq-benchmark v1.9.0

Features

• expand benchmarking datasets with IMGAG somatic validation data (#61) (307e034)
• Liftover callsets from hg19/GRCh37 to hg38/GRCh38 (#70) (28f96a8)
• only consider PASS and no-filter variants in given callsets (#66) (7c48a8c)
• stratification of VAFs (#68) (8d2c121)

Bug Fixes

• fix failing giab testcase (#72) (5f24c56)
• imgag-somatic and integrate seqc2 (#63) (274d800)
• merge truthsets (#71) (aa8ca0a)
• rename-contigs to include target bed intersection and add mapping files to resources (#73) (65930c5)
• use latest datavzrd wrapper, integrating templating of config, thereby avoiding leaks of local storage paths into datavzrd config (#74) (40a64ed)