Haplotype-aware CNV analysis from single-cell RNA-seq

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

WisecondorX — An evolved WISECONDOR

Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.

a tool for predicting mitochondrial DNA deletions using soft-clipping

Workflow for Sequenza, cellularity and ploidy

Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.

ampliCNV is a Python 3.x package for copy number (CNV) variation detection on whole exome sequencing (WES) data from amplicon-based enrichment technologies.

Cobalt is a tool to detect copy-number variants from next generation sequencing (NGS) data

Materials & Methods for CNV calling with Genalice software against a benchmark dataset

Benchmarking records for scRNA-seq CNV detection.

Docker image for CNVnator on ubuntu 16.04

ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.

CNV-detection algorithm developed with large Dataset

Mining CNV based on rice Nipponbare genome using resequencing data.

Fork of the CoNVaDING software - Copy Number Variation Detection In NGS Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage NGS data.

multiomics single-cell copy number alterations detection