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resistome

Here are 10 public repositories matching this topic...

tseemann / nullarbor

💾 📃 "Reads to report" for public health and clinical microbiology

public-health report variant-calling bacteria fastq phylogenomics denovo-assembly genotyping resistome virulome

Updated Mar 19, 2024
Perl

will-rowe / groot

A resistome profiler for Graphing Resistance Out Of meTagenomes

metagenomics lsh alignment minhash antibiotic-resistance resistome

Updated May 11, 2020
Go

rMAP

GunzIvan28 / rMAP

Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS

bacteria wgs illumina phylogenomics resistome eskape mobilome

Updated Mar 7, 2024
Shell

WGCA

icaromsc / WGCA

JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes

snakemake comparative-genomics genomic-data-analysis genomic-islands resistome virulence-genes bioinformatics-workflow prophages

Updated Nov 10, 2020
Python

will-rowe / drax

A pipeline for Detecting Resistome Associated taXa

metagenomics resistome

Updated Jun 11, 2018
Groovy

lizramirezcar / multi-genome

Mapping, snps calling, phylogeny

bioinformatics snps ngs phylogenetic-trees resistome bacterial-genomes

Updated Oct 2, 2019
Shell

sauravbsaha / uCAREChemSuiteCLI

Predicts bacterial resistome

cran resistance drug bacteria r-package predictor cran-r resistome escherichia coli gram-negative

Updated Jun 11, 2019
R

yuqing-feng / script_for_meta

Repo for scripts/codes applied in my studies

rna-seq metagenomics amplicon-sequencing resistome

Updated Mar 30, 2023

ralsallaq / metaGx_make

A number of pipelines that are managed by Gnu Make for conducting various analyses on high-throughput NGS

resistome gene-discovery assembly-based read-based

Updated Aug 12, 2020
Shell

amr-2024-team-lahti

NCBI-Codeathons / amr-2024-team-lahti

This repository contains tools and resources developed by Team Lahti during the "Resistance is Futile: A Codeathon to Combat Antimicrobial Resistance" (September 2024), hosted by NCBI and NIAID.

resistome amr-2024 lee2023

Updated Sep 27, 2024
JavaScript

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