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[MNT] Add pre-commit, drop python 3.8, add python 3.12, add yamllint, add toml-sort #15

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[MNT] Add pre-commit, drop python 3.8, add python 3.12, add yamllint, add toml-sort

[MNT] Add pre-commit, drop python 3.8, add python 3.12, add yamllint, add toml-sort #15

Workflow file for this run

.github/workflows/pytest.yaml at a601736
name: pytest
concurrency:
group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }}
cancel-in-progress: true
on: # yamllint disable-line rule:truthy
pull_request:
push:
branches: [main]
workflow_dispatch:
schedule:
- cron: '0 8 * * 1'
jobs:
pytest:
timeout-minutes: 30
strategy:
fail-fast: false
matrix:
os: [ubuntu, macos, windows]
python-version: [3.9, "3.10", "3.11", "3.12"]
name: ${{ matrix.os }} - py${{ matrix.python-version }}
runs-on: ${{ matrix.os }}-latest
defaults:
run:
shell: bash
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Setup Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
architecture: 'x64'
- name: Install package
run: |
python -m pip install --progress-bar off --upgrade pip setuptools
python -m pip install --progress-bar off .[test]
- name: Display system information
run: pycrostates-sys_info --developer
- name: Display MNE info
run: mne sys_info -pd
- name: Get testing dataset version
run: |
curl https://raw.githubusercontent.com/mne-tools/mne-testing-data/master/version.txt -o mne_testing_data_version.txt
- name: Cache testing dataset
uses: actions/cache@v3
with:
key: mne-testing-${{ hashFiles('mne_testing_data_version.txt') }}
path: ~/mne_data
- name: Download testing dataset
run: python -c "import mne; mne.datasets.testing.data_path(verbose=True)"
- name: Run pytest
run: pytest pycrostates --cov=pycrostates --cov-report=xml --cov-config=pyproject.toml
- name: Upload to codecov
uses: codecov/codecov-action@v3
with:
files: ./coverage.xml
flags: unittests # optional
name: codecov-umbrella # optional
verbose: true # optional (default = false)
pytest-pip-pre:
timeout-minutes: 30
strategy:
fail-fast: false
matrix:
python-version: ["3.11"]
name: pip pre-release - py${{ matrix.python-version }}
runs-on: ubuntu-latest
defaults:
run:
shell: bash
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Setup Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
architecture: 'x64'
- name: Install dependencies
run: |
python -m pip install --progress-bar off --upgrade pip setuptools
python -m pip install --progress-bar off .[test]
python -m pip install --progress-bar off --upgrade git+https://github.com/mne-tools/mne-python
python -m pip install --progress-bar off --upgrade --pre --only-binary :all: -i https://pypi.anaconda.org/scientific-python-nightly-wheels/simple --timeout=180 numpy scipy scikit-learn matplotlib
- name: Display system information
run: pycrostates-sys_info --developer
- name: Display MNE info
run: mne sys_info -pd
- name: Get testing dataset version
run: |
curl https://raw.githubusercontent.com/mne-tools/mne-testing-data/master/version.txt -o mne_testing_data_version.txt
- name: Cache testing dataset
uses: actions/cache@v3
with:
key: mne-testing-${{ hashFiles('mne_testing_data_version.txt') }}
path: ~/mne_data
- name: Download testing dataset
run: python -c "import mne; mne.datasets.testing.data_path(verbose=True)"
- name: Run pytest
run: pytest pycrostates --cov=pycrostates --cov-report=xml --cov-config=pyproject.toml
- name: Upload to codecov
uses: codecov/codecov-action@v3
with:
files: ./coverage.xml
flags: unittests # optional
name: codecov-umbrella # optional
verbose: true # optional (default = false)