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fix: Use constructor injection instead of field injection in Java code in Challenge-Service App #1
Commits on Aug 2, 2023
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chore: Remove OpenChallenges MinIO (Sage-Bionetworks#1880)
* Remove openchallenges-minio * Remove references to MinIO * Remove references to MinIO
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fix(ui): remove drop shadows from select cards (Sage-Bionetworks#1905)
* remove drop shadow from org card * remove drop shadow from goal card * add grey border around logo on org card
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fix(ui): Add default text for empty fields on profile pages (Sage-Bio…
…networks#1904) * add default value for missing DOI * update name of template * add default value for empty inputDataTypes * add default value for empty incentives * use grey text for "NA" values
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chore: Remove OpenChallenges DB CLI (Sage-Bionetworks#1882)
* Remove OC DB CLI * Remove references to OC DB CLI * Remove references to OC DB CLI
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Commits on Aug 3, 2023
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feat: Implement challenge contributors in Challenge Profile (Sage-Bio…
…networks#1893) * add angular to get contributions * change orgId t o string * replace sponsors with contributors * update org card component * update some org card layouts * not show members by default and update org card layouts * use `grid` on card-group to better fit our cards layout * hide members * fix cards layout in home * add brief description to profile page sections (#2) * Update libs/openchallenges/challenge/src/lib/challenge-contributors/challenge-contributors.component.html Co-authored-by: Thomas Schaffter <[email protected]> * fix grid space for person cards * fix org-member's space --------- Co-authored-by: Verena Chung <[email protected]> Co-authored-by: Thomas Schaffter <[email protected]>
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feat: Specify the data version in the OC footer (Sage-Bionetworks#1916)
* Add `Data updated on` to the footer * Update config for container
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feat(ui): Modify the default organization sorting to be based on the …
…`challenge_count` (Sage-Bionetworks#1910) * change default sort to challenge_count in org search * sort orgs in challenge contributors * sort by alphabetic in challenge-contributors
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feat(ui): Open and reorder challenge filters (Sage-Bionetworks#1908)
* reorder filters for challenges * open all filters for challenges * comment out input data type filter * move year down * add back input data type and put dropdowns together * move input data type up * hide input data type filter
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feat(ui): Hide user related widgets across app (Sage-Bionetworks#1915)
* diable user direction * hide challenge-stargazers * hide user metrics in home * hide star button on cards
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docs: Update the Team page (Sage-Bionetworks#1919)
* Limit to 3 members per row * Add link to profiles * Add LinkedIn icon for maria but wo url for now * Make .card-roles use all its space * Fix width of the roles instead of using br * Pack together the members and add bmargin below team * Update libs/openchallenges/team/src/lib/team.component.html Co-authored-by: Verena Chung <[email protected]> * RRemove maria Linkedin --------- Co-authored-by: Verena Chung <[email protected]>
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feat(ui): Make width of challenge and org cards consistent (Sage-Bion…
…etworks#1921) * make width of challenge and org cards consistent * fix failed test on org-card * remove row col in parent tag of car-group
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Commits on Aug 4, 2023
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feat: Add ACM certificate for OC prod DNS (Sage-Bionetworks#1925)
* Add prod cert * Fix typo * Keep a single cert * Undo changes * More undo * Fix stack after forgetting initial cert
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feat: Setup Google Analytics (Sage-Bionetworks#1923)
* Add Tag Manager code to header * Add Google Tag Manager * Remove GTM from index.html * Send GTM tag when loading a page * Send tag when viewing a page
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chore: Point
openchallenges.io
to the OC preview EC2 instance (Sage……-Bionetworks#1941) * Use new cert with the preview instance ALB * Add new DNS record
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Commits on Aug 5, 2023
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feat(ui): Add announcement box in the home page (Sage-Bionetworks#1939)
* add blank text * add some colors * adjust spacing a bit * Update libs/openchallenges/home/src/lib/home.component.html Co-authored-by: Verena Chung <[email protected]> * Update libs/openchallenges/home/src/lib/home.component.html Co-authored-by: Thomas Schaffter <[email protected]> * update some texts * adjust color using amber50&500 * fix typo * Update libs/openchallenges/home/src/lib/home.component.html Co-authored-by: Verena Chung <[email protected]> * remove redirection link to about page --------- Co-authored-by: Verena Chung <[email protected]> Co-authored-by: Thomas Schaffter <[email protected]>
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feat(ui): Adjust layout of cards (Sage-Bionetworks#1932)
* replace auto-fit by auto-fill * remove justify-items in home since not needed anymore * add media for card-group * update spacing for person card * change to use fixed width for cards * use 320px back for card width * align center for cards in home * change back to 300px since limited space in search page
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fix(ui): Hide in-progess items for soft launch (Sage-Bionetworks#1944)
* hide stargazers metric * show N number of views * hide verfication badge for now
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Commits on Aug 14, 2023
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feat(data): weekly OC db update (Sage-Bionetworks#1952)
* daily update; add 1 new challenge * daly update; add 3 new orgs * update challenge headlines and descriptions * add new platform * add new challenges * update org desc * add new orgs * add platform for "other" * update associating platform IDs * add 3 challenges * add 8 orgs; update challenge counts * fix: add "" to enum of status values * revert 594b45b "fix" ('twas not a fix...) * give "Other" platform id of 0 * reassign og platform ids; assign statuses to empty ones * assign id=14 for "Other" platform * add 2 challenges * add 6 orgs * Add Eterna logo * Update app data last updated on * Update app data last updated on --------- Co-authored-by: Thomas Schaffter <[email protected]>
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feat: Add /components/{componentLabel}/attributes endpoint (Sage-Bion…
…etworks#1903) * add endpoint * filled in docstrings * fix backward arguments * moved schemaUrl from path to query folder * fix c+p error * handle merge conflict * fix typo
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chore(ng): Migrate the project
openchallenges-challenge
to Ng stand……alone components (Sage-Bionetworks#1957) * Convert challenge-contributor to standalone * Convert challenge-organizers to standalone * Convert all components to standalone * Finalize challenge project
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chore(ng): Migrate the project
openchallenges-home
and `openchallen……ges-challenge-search` to Ng standalone components (Sage-Bionetworks#1959) * Migrate challenge-search lib to standalone * Migrate ng config lib * Migrate home challenge search component * Finalize migration to standalone components * Fix test
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chore(ng): Migrate projects to ng standalone components (Part 3) (Sag…
…e-Bionetworks#1961) * Migrate openchallenges-login to standalone components * Migrate openchallenges-not-found to standalone components * Migrate openchallenges-signup * Migrate openchallenges-team * Migrate openchallenges-util * Migrate openchallenges-user-profile * Migrate openchallenges-org-profile * Migrate openchallenges-org-search
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Commits on Aug 15, 2023
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chore(ng): Migrate the project
openchallenges-ui
to Ng standalone c……omponents (Sage-Bionetworks#1964) * Migrate some components from ui * Fix tests * Remove imports of UiModule * Remove UiModule
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Commits on Aug 16, 2023
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chore(ng): Migrate to Ng self-closing tags (Sage-Bionetworks#1973)
* Use Ng self-closing tags * Remove remaining references to UiModule
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Commits on Aug 17, 2023
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feat: Investigate yarn cache folder (Sage-Bionetworks#1979)
* Investigate yarn cache folder * Mount yarn cache folder * ls cache folder in container * Install yarn packages * Install Yarn packages without the cache * Install Yarn packages without the cache * Reenable caching * Cleanup * Update workflow that runs when pushing to main * Restore docker-outside-of-docker * Use more robust path to yarn cache * Comment out poetry to trigger new run
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Commits on Aug 18, 2023
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feat: Cache R packages in CI workflow (Sage-Bionetworks#1982)
* Set up renv cache * Mount R cache folder * Create cache folder * Prefix with yarn * chmod * sudo * ls * chown again * sudo again * prepare-r * Reorder * Install node.js packages * fix typo * Trigger new run * Try to force update * trigger * trigger * Cleanup
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feat: Add /nodes/{nodeLabel}/dependencies endpoint (Sage-Bionetworks#…
…1913) * add endpoint * filled in docstrings * fix backward arguments * moved schemaUrl from path to query folder * add new endpoint * add new endpoint * fix c+p error * fx c+p error * change endpoint operationId * change endpoint operationId * handle merge conflict * change name of endpoint * fix docstring terminology
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feat: Cache Poetry and venv in CI workflow (Sage-Bionetworks#1983)
* Cache Poetry and venv * Install Node.js packages * trigger * Debug * Debug * Debug * Dub * Remove single quotes * Trigger * Without cache (reference) * Restore poetry cache * Caching venv * Cleanup * Cleanup
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feat: Cache Gradle in CI workflow (Sage-Bionetworks#1988)
* Prepare caching for Gradle * Fix missing mount in CI workflow for main * Fix typo * Cleanup * Trigger * Undo trigger
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Commits on Aug 19, 2023
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chore: Migrate the project openchallenges-app to Ng standalone compon…
…ents (Sage-Bionetworks#1993) * Migrate remaining components to Ng standalone * Migrate app to standalone
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Commits on Aug 21, 2023
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chore(tools): Add SonarScanner CLI to the devcontainer (Sage-Bionetwo…
…rks#2000) * Add pnpm to the devcontainer * Add SonarScanner CLI to the devcontainer
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Commits on Aug 22, 2023
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Commits on Aug 23, 2023
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feat(ui): Adjust long texts to better fit on challenge card (Sage-Bio…
…networks#1987) * change back to use 320px width for cards * increase title height * Revert "increase title height" This reverts commit eddf362. * Revert "change back to use 320px width for cards" This reverts commit d685159. * change back to use 320px width for cards * match title height with line height * truncate title to 60 characters * Revert "change back to use 320px width for cards" This reverts commit facb213. * avoid breaking words * exclude special characters * use css approach to truncate long texts * remove extra space * improve footer layout * change width back to 320px on cards * remove height for footer * adjust card group layout * Revert "adjust card group layout" This reverts commit 1d7afea. * update min-height * change variable name in line-camp mixin * rename mixin * fix typo
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Commits on Aug 24, 2023
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feat: add /nodes/{nodeLabel}/validationRules endpoint (Sage-Bionetwor…
…ks#1918) * add endpoint * filled in docstrings * fix backward arguments * moved schemaUrl from path to query folder * add new endpoint * add new endpoint * fix c+p error * fx c+p error * change endpoint operationId * change endpoint operationId * add new endpoint * add new endpoint * add component Display * add component Display * add component Display * handle merge conflict * add new endpoint * handle merge * change name of endpoint * chnage diescription of validation rule
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Commits on Aug 25, 2023
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fix: Fix CI workflow access to Yarn cache folder (Sage-Bionetworks#2012)
* Disable Yarn cache * Print .yarn/cache * Update perm yarn cache * Create yarn cache folder if it does not exist * More robust method * Fix typo * Update root permission * Update workflow for main * Cleanup * Set up buildx * Switch back to did * Switch back to did * Update did to 2.3.1 * No longer mount docker * Cleanup * Update to dev container CLI 0.51.0 * Undo last commit * Back to did 20.10.24
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feat: Change endpoint names to use nodes instead of components (Sage-…
…Bionetworks#1977) * add endpoint * filled in docstrings * fix backward arguments * moved schemaUrl from path to query folder * add new endpoint * add new endpoint * fix c+p error * fx c+p error * change endpoint operationId * change endpoint operationId * add new endpoint * add new endpoint * add component Display * add component Display * add component Display * handle merge conflict * add new endpoint * handle merge * change name of endpoint * rename endpoints * chnage diescription of validation rule * change endpoint name * change endpoint name * change endpoint name * update pythn version * update pythn version * fix unintentional change
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Commits on Aug 27, 2023
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chore: Update Dev Container CLI (Sage-Bionetworks#2024)
* Update Dev Container CLI * Update Trivy * Update most tools * Restore devcontainer CLI 0.50.2
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Commits on Aug 28, 2023
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feat: Notify Developers when they need to update VS Code (Sage-Bionet…
…works#2010) * Invite to update vs code * Cleanup * Add dot * Update message * Make message more user friendly
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Commits on Aug 29, 2023
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feat: Navigate to search pages when clicking on the home page stats (S…
…age-Bionetworks#2020) * Make stats clickable * Add RouterTestingModule to unit test * Fix home tests
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feat: Generate and publish coverage report for one Java project (Sage…
…-Bionetworks#2032) * Configure sonar for OC image service * Add JaCoCo * Run jacoco as part of the test task * Remove gradlew.bat * Add task `sonar` * Minor improvement * Add badges to image-service
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feat: Add /assetTypes/{assetType}/assetViews/{assetViewId}/datasets/{…
…datasetId}/files endpoint (Sage-Bionetworks#2026) * add new endpoint * revert unintentional change
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ci: Push Sonar scan results when pushing to
main
(Sage-Bionetworks#……2043) * Pass SONAR_TOKEN to dev container * Run sonar when merging to `main` in CI workflow
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Commits on Aug 30, 2023
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chore(java): Upgrade to Gradle v8 (Sage-Bionetworks#2050)
* Update the image service to use gradle v8 * Update the image service to use gradle v8 * Update the challenge service * Update the organization service * Update the apu gateway * Update the auth-service * Update challenge-to-elasticsearch-service * Update config-server * Update core-service * Update kaggle-to-kafka-service * Update service-registry * Update user-service * Update app-config-data * Update kafka-admin * Update kafka-consumer * Update kafka-model * Update kafka-producer * Update shared-java-util
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feat: Scan OC Angular app with Sonar (Sage-Bionetworks#2052)
* Add sonar scanner tool * Validate args * Define sonar task for openchallenges-app
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ci: Scan Schematic API with Sonar (Sage-Bionetworks#2054)
* Simplify the syntax of the `sonar` task * Update the sonar task of openchallenges-app * Fix doc
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Commits on Sep 1, 2023
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Commits on Sep 2, 2023
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docs: Create dashboard to track code quality (Sage-Bionetworks#2056)
* Create CODE_QUALITY.md * Add more projects * Use bold font for product name * Add data for OC organization service * Add metrics for OC challenge service * Add Section Definitions
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Commits on Sep 4, 2023
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refactor: Rename the task
prepare
tocreate-config
(Sage-Bionetwo……rks#2076) * Remove `shx` * Rename task `prepare` to `create-config`
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Commits on Sep 5, 2023
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chore: Update OC image service to OpenAPI Generator v7 (Sage-Bionetwo…
…rks#2079) * Update OpenAPI Generator to v7 * Regenerate image service * Run OpenAPI Generator and fixes issues * Update tool
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refactor: Deprecate tasks
prepare-<languages>
(Sage-Bionetworks#2083)* Define prepare task for R projects * Small improvement * Define prepare task for Java projects * Define prepare task for Python projects * Update command `workspace-install`
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Commits on Sep 6, 2023
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ci: Add the command
workspace-install-affected
(Sage-Bionetworks#2089)* Add the command `workspace-install-affected` * Use new command in CI workflow
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chore: Update the Dev Container August 2023 (Sage-Bionetworks#2025)
* Restore changes made in Sage-Bionetworks#2023 * Remove 2 deprecated workflow * Add VS Code extension `github.vscode-github-actions` * Add VS Code extension `ms-playwright.playwright`
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Commits on Sep 7, 2023
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Commits on Sep 8, 2023
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