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refactor: Exchange of the canonical function #336

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@BenOrl BenOrl commented Nov 7, 2024

Boolean spell is used instead of a heatmap.

Summary by CodeRabbit

  • New Features
    • Updated plot configurations for hgvsp and hgvsc columns to enhance data visualization with a new boolean logic representation.
  • Improvements
    • Refined data rendering and handling processes to ensure a more structured approach to visualizations.

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coderabbitai bot commented Nov 7, 2024

Walkthrough

The changes involve updates to the YAML configuration for variant calls, specifically altering the plot settings for the hgvsp and hgvsc columns from a heatmap representation to a new spell configuration. This new configuration utilizes a URL with parameters for true and false values. The modifications maintain the existing structure of datasets and views while refining the handling of spliceai and alphamissense scores, ensuring a consistent visual representation aligned with the new configurations.

Changes

File Change Summary
workflow/resources/datavzrd/variant-calls-template.datavzrd.yaml Updated plot configurations for hgvsp and hgvsc columns from heatmap to spell with URL parameters for boolean values. Custom content references remain unchanged.

Possibly related PRs

  • fix: processing vembrane config #330: Modifications to the workflow/resources/datavzrd/variant-calls-template.datavzrd.yaml file that relate directly to the main PR's updates in handling and rendering data.

Suggested reviewers

  • dlaehnemann

Poem

🐇 In the meadow where data flows,
A new spell for the plot now glows.
From heatmaps to logic, we leap,
With true and false, our insights we keep.
Hooray for the changes, let's cheer and play,
For clearer views brighten our day! 🌼


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Actionable comments posted: 1

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between 0d8dba7 and c5d97a9.

📒 Files selected for processing (1)
  • workflow/resources/datavzrd/variant-calls-template.datavzrd.yaml (2 hunks)
🔇 Additional comments (2)
workflow/resources/datavzrd/variant-calls-template.datavzrd.yaml (2)

307-312: LGTM: Boolean visualization configuration looks good!

The spell configuration for boolean values is properly structured with appropriate true/false value mappings.


307-312: Verify documentation for the visualization change

The switch from heatmap to boolean spell visualization is a significant change that might affect users. Please ensure that:

  1. The documentation is updated to reflect this change
  2. A migration guide is provided if needed
  3. The change is mentioned in the changelog

Also applies to: 482-487

Comment on lines +482 to +487
spell:
url: v1.1.3/logic/boolean
with:
true_values: "true"
false_values: "false"
custom-content: ?empty_content
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⚠️ Potential issue

Fix inconsistent configuration keys between coding and non-coding sections

The boolean spell configuration uses different key names in the coding and non-coding sections:

  • Coding section: true_value, false_value
  • Non-coding section: true_values, false_values (plural)

This inconsistency could cause the non-coding section to fail. Both sections should use the same key names.

Apply this fix to maintain consistency:

  spell:
    url: v1.1.3/logic/boolean
    with:
-     true_values: "true"
-     false_values: "false"
+     true_value: "true"
+     false_value: "false"
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
spell:
url: v1.1.3/logic/boolean
with:
true_values: "true"
false_values: "false"
custom-content: ?empty_content
spell:
url: v1.1.3/logic/boolean
with:
true_value: "true"
false_value: "false"
custom-content: ?empty_content

@BenOrl BenOrl closed this Nov 7, 2024
@BenOrl BenOrl changed the title Exchange of the canonical function refractor: Exchange of the canonical function Nov 7, 2024
@BenOrl BenOrl changed the title refractor: Exchange of the canonical function refactor: Exchange of the canonical function Nov 7, 2024
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