Citationtools #874
edmundmillerlinting.yml
on: pull_request
EditorConfig
14s
Prettier
11s
PythonBlack
16s
nf-core
1m 45s
Annotations
57 errors
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EditorConfig
Process completed with exit code 1.
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Bwameth Single-End:
Bwameth Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/bd398dfb432492c55351d70617e5f74d/output/bwameth/reference_genome/bwameth
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Bwameth Single-End With Index:
Bwameth Single-End With Index#L1
Assertion failed:
assert workflow.success
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workflow false
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Bwameth Single-End RRBS:
Bwameth Single-End RRBS#L1
Assertion failed:
7 of 7 assertions failed
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Bwameth Single End RRBS With Index:
Bwameth Single End RRBS With Index#L1
Assertion failed:
assert workflow.success
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workflow false
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Bismark Hisat Single-End:
Bismark Hisat Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/516571ef1a0ace9548076c68c097da45/output/bismark_hisat/reference_genome/BismarkIndex
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Bismark Hisat Single-End With Index:
Bismark Hisat Single-End With Index#L1
Assertion failed:
assert workflow.success
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workflow false
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Bismark Hisat Single-End With RRBS:
Bismark Hisat Single-End With RRBS#L1
Assertion failed:
13 of 13 assertions failed
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Bismark Hisat Single-End With RRBS With Index:
Bismark Hisat Single-End With RRBS With Index#L1
Assertion failed:
assert workflow.success
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workflow false
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Bismark Hisat Single-End:
Bismark Hisat Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/516571ef1a0ace9548076c68c097da45/output/bismark_hisat/reference_genome/BismarkIndex
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Bismark Hisat Single-End With Index:
Bismark Hisat Single-End With Index#L1
Assertion failed:
assert workflow.success
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workflow false
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Bismark Hisat Single-End With RRBS:
Bismark Hisat Single-End With RRBS#L1
Assertion failed:
13 of 13 assertions failed
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Bismark Hisat Single-End With RRBS With Index:
Bismark Hisat Single-End With RRBS With Index#L1
Assertion failed:
assert workflow.success
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workflow false
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Bwameth Single-End:
Bwameth Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/bd398dfb432492c55351d70617e5f74d/output/bwameth/reference_genome/bwameth
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Bwameth Single-End With Index:
Bwameth Single-End With Index#L1
Assertion failed:
assert workflow.success
| |
workflow false
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|
Bwameth Single-End RRBS:
Bwameth Single-End RRBS#L1
Assertion failed:
7 of 7 assertions failed
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Bwameth Single End RRBS With Index:
Bwameth Single End RRBS With Index#L1
Assertion failed:
assert workflow.success
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workflow false
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Bismark Single-End:
Bismark Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/76e3f1e3d670957ab6a1a2e6f3042831/output/bismark/reference_genome/BismarkIndex
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Bismark Single-End With Index:
Bismark Single-End With Index#L1
Assertion failed:
assert workflow.success
| |
workflow false
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Bismark Single-End With RRBS:
Bismark Single-End With RRBS#L1
Assertion failed:
13 of 13 assertions failed
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Bismark Single-End With RRBS With Index:
Bismark Single-End With RRBS With Index#L1
Assertion failed:
assert workflow.success
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workflow false
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Bismark Single-End NOMe-seq:
Bismark Single-End NOMe-seq#L1
Assertion failed:
16 of 16 assertions failed
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Bismark Clip R1 - 2:
Bismark Clip R1 - 2#L1
Assertion failed:
16 of 16 assertions failed
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Bismark Single-End:
Bismark Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/76e3f1e3d670957ab6a1a2e6f3042831/output/bismark/reference_genome/BismarkIndex
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Bismark Single-End With Index:
Bismark Single-End With Index#L1
Assertion failed:
assert workflow.success
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workflow false
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Bismark Single-End With RRBS:
Bismark Single-End With RRBS#L1
Assertion failed:
13 of 13 assertions failed
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Bismark Single-End With RRBS With Index:
Bismark Single-End With RRBS With Index#L1
Assertion failed:
assert workflow.success
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workflow false
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Bismark Single-End NOMe-seq:
Bismark Single-End NOMe-seq#L1
Assertion failed:
16 of 16 assertions failed
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Bismark Clip R1 - 2:
Bismark Clip R1 - 2#L1
Assertion failed:
16 of 16 assertions failed
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Bismark Hisat Single-End:
Bismark Hisat Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/516571ef1a0ace9548076c68c097da45/output/bismark_hisat/reference_genome/BismarkIndex
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Bismark Hisat Single-End With Index:
Bismark Hisat Single-End With Index#L1
Assertion failed:
assert workflow.success
| |
workflow false
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|
Bismark Hisat Single-End With RRBS:
Bismark Hisat Single-End With RRBS#L1
Assertion failed:
13 of 13 assertions failed
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|
Bismark Hisat Single-End With RRBS With Index:
Bismark Hisat Single-End With RRBS With Index#L1
Assertion failed:
assert workflow.success
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workflow false
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Bwameth Single-End:
Bwameth Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/bd398dfb432492c55351d70617e5f74d/output/bwameth/reference_genome/bwameth
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Bwameth Single-End With Index:
Bwameth Single-End With Index#L1
Assertion failed:
assert workflow.success
| |
workflow false
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|
Bwameth Single-End RRBS:
Bwameth Single-End RRBS#L1
Assertion failed:
7 of 7 assertions failed
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Bwameth Single End RRBS With Index:
Bwameth Single End RRBS With Index#L1
Assertion failed:
assert workflow.success
| |
workflow false
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|
Bismark Single-End:
Bismark Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/76e3f1e3d670957ab6a1a2e6f3042831/output/bismark/reference_genome/BismarkIndex
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Bismark Single-End With Index:
Bismark Single-End With Index#L1
Assertion failed:
assert workflow.success
| |
workflow false
|
|
Bismark Single-End With RRBS:
Bismark Single-End With RRBS#L1
Assertion failed:
13 of 13 assertions failed
|
|
Bismark Single-End With RRBS With Index:
Bismark Single-End With RRBS With Index#L1
Assertion failed:
assert workflow.success
| |
workflow false
|
|
Bismark Single-End NOMe-seq:
Bismark Single-End NOMe-seq#L1
Assertion failed:
16 of 16 assertions failed
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|
Bismark Clip R1 - 2:
Bismark Clip R1 - 2#L1
Assertion failed:
16 of 16 assertions failed
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Bwameth Single-End:
Bwameth Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/bd398dfb432492c55351d70617e5f74d/output/bwameth/reference_genome/bwameth
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Bwameth Single-End With Index:
Bwameth Single-End With Index#L1
Assertion failed:
assert workflow.success
| |
workflow false
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|
Bwameth Single-End RRBS:
Bwameth Single-End RRBS#L1
Assertion failed:
7 of 7 assertions failed
|
|
Bwameth Single End RRBS With Index:
Bwameth Single End RRBS With Index#L1
Assertion failed:
assert workflow.success
| |
workflow false
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|
Bismark Hisat Single-End:
Bismark Hisat Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/516571ef1a0ace9548076c68c097da45/output/bismark_hisat/reference_genome/BismarkIndex
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Bismark Hisat Single-End With Index:
Bismark Hisat Single-End With Index#L1
Assertion failed:
assert workflow.success
| |
workflow false
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|
Bismark Hisat Single-End With RRBS:
Bismark Hisat Single-End With RRBS#L1
Assertion failed:
13 of 13 assertions failed
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|
Bismark Hisat Single-End With RRBS With Index:
Bismark Hisat Single-End With RRBS With Index#L1
Assertion failed:
assert workflow.success
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workflow false
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Bismark Single-End:
Bismark Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/76e3f1e3d670957ab6a1a2e6f3042831/output/bismark/reference_genome/BismarkIndex
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Bismark Single-End With Index:
Bismark Single-End With Index#L1
Assertion failed:
assert workflow.success
| |
workflow false
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|
Bismark Single-End With RRBS:
Bismark Single-End With RRBS#L1
Assertion failed:
13 of 13 assertions failed
|
|
Bismark Single-End With RRBS With Index:
Bismark Single-End With RRBS With Index#L1
Assertion failed:
assert workflow.success
| |
workflow false
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|
Bismark Single-End NOMe-seq:
Bismark Single-End NOMe-seq#L1
Assertion failed:
16 of 16 assertions failed
|
|
Bismark Clip R1 - 2:
Bismark Clip R1 - 2#L1
Assertion failed:
16 of 16 assertions failed
|
Artifacts
Produced during runtime
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linting-logs
Expired
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125 KB |
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