Citationtools #874
GitHub Actions / JUnit Test Report
failed
Oct 17, 2023 in 0s
4 tests run, 0 passed, 0 skipped, 4 failed.
Annotations
Check failure on line 1 in Bismark Hisat Single-End
github-actions / JUnit Test Report
Bismark Hisat Single-End
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/516571ef1a0ace9548076c68c097da45/output/bismark_hisat/reference_genome/BismarkIndex
Raw output
Nextflow stdout:
WARN: The following invalid input values have been detected:
* --baseDir: /home/runner/work/methylseq/methylseq
* --base-dir: /home/runner/work/methylseq/methylseq
* --outputDir: /home/runner/work/methylseq/methylseq/.nf-test/tests/516571ef1a0ace9548076c68c097da45/output
* --output-dir: /home/runner/work/methylseq/methylseq/.nf-test/tests/516571ef1a0ace9548076c68c097da45/output
ERROR ~ BUG! exception in phase 'semantic analysis' in source unit 'Script_8b8577e7' The lookup for WorkflowMethylseq caused a failed compilation. There should not have been any compilation from this call.
-- Check script 'main.nf' at line: 55 or see '/home/runner/work/methylseq/methylseq/.nf-test/tests/516571ef1a0ace9548076c68c097da45/meta/nextflow.log' file for more details
Nextflow stderr:
Check failure on line 1 in Bismark Hisat Single-End With Index
github-actions / JUnit Test Report
Bismark Hisat Single-End With Index
Assertion failed:
assert workflow.success
| |
workflow falseRaw output
Nextflow stdout:
WARN: The following invalid input values have been detected:
* --baseDir: /home/runner/work/methylseq/methylseq
* --base-dir: /home/runner/work/methylseq/methylseq
* --outputDir: /home/runner/work/methylseq/methylseq/.nf-test/tests/9c0497eebb4d1563170da2e9b9bcfd1e/output
* --output-dir: /home/runner/work/methylseq/methylseq/.nf-test/tests/9c0497eebb4d1563170da2e9b9bcfd1e/output
ERROR ~ BUG! exception in phase 'semantic analysis' in source unit 'Script_8b8577e7' The lookup for WorkflowMethylseq caused a failed compilation. There should not have been any compilation from this call.
-- Check script 'main.nf' at line: 55 or see '/home/runner/work/methylseq/methylseq/.nf-test/tests/9c0497eebb4d1563170da2e9b9bcfd1e/meta/nextflow.log' file for more details
Nextflow stderr:
Check failure on line 1 in Bismark Hisat Single-End With RRBS
github-actions / JUnit Test Report
Bismark Hisat Single-End With RRBS
Assertion failed:
13 of 13 assertions failed
Raw output
Nextflow stdout:
WARN: The following invalid input values have been detected:
* --baseDir: /home/runner/work/methylseq/methylseq
* --base-dir: /home/runner/work/methylseq/methylseq
* --outputDir: /home/runner/work/methylseq/methylseq/.nf-test/tests/b0548a650999fa17c74f5d9894a9d895/output
* --output-dir: /home/runner/work/methylseq/methylseq/.nf-test/tests/b0548a650999fa17c74f5d9894a9d895/output
ERROR ~ BUG! exception in phase 'semantic analysis' in source unit 'Script_8b8577e7' The lookup for WorkflowMethylseq caused a failed compilation. There should not have been any compilation from this call.
-- Check script 'main.nf' at line: 55 or see '/home/runner/work/methylseq/methylseq/.nf-test/tests/b0548a650999fa17c74f5d9894a9d895/meta/nextflow.log' file for more details
Nextflow stderr:
Check failure on line 1 in Bismark Hisat Single-End With RRBS With Index
github-actions / JUnit Test Report
Bismark Hisat Single-End With RRBS With Index
Assertion failed:
assert workflow.success
| |
workflow falseRaw output
Nextflow stdout:
WARN: The following invalid input values have been detected:
* --baseDir: /home/runner/work/methylseq/methylseq
* --base-dir: /home/runner/work/methylseq/methylseq
* --outputDir: /home/runner/work/methylseq/methylseq/.nf-test/tests/878f7d3ae067e2d57ede01e9aedc9daa/output
* --output-dir: /home/runner/work/methylseq/methylseq/.nf-test/tests/878f7d3ae067e2d57ede01e9aedc9daa/output
ERROR ~ BUG! exception in phase 'semantic analysis' in source unit 'Script_8b8577e7' The lookup for WorkflowMethylseq caused a failed compilation. There should not have been any compilation from this call.
-- Check script 'main.nf' at line: 55 or see '/home/runner/work/methylseq/methylseq/.nf-test/tests/878f7d3ae067e2d57ede01e9aedc9daa/meta/nextflow.log' file for more details
Nextflow stderr:
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