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This site provides a collection of statistical models to estimate position errors, movement model parameters, and most probable positions from tracking data. This project is a joint effort from Pelagic Fisheries Research Program (PFRP) of Joint Institute for Marine & Atmospheric Research, University of Hawaii at Manoa and Large Pelagics Research Center (LPRC).
Here we have selected a few key papers to understand the models better. For a more complete reading list, refer to our publication wiki page.
- Trackit with SST - Lam, Chi H., Anders Nielsen, and John R. Sibert, 2010. Incorporating sea-surface temperature to the light-based geolocation model TrackIt. Marine Ecology Progress Series MEPS 419:71-84
- Trackit - Nielsen, Anders, and John R. Sibert, 2007. State-space model for light-based tracking of marine animals. Can. J. Fish. Aquat. Sci. 64: 1055-1068.
- Ukfsst - Lam, Chi H., Anders Nielsen, and John R. Sibert, 2008. Improving light and temperature based geolocation by unscented Kalman filtering. Fisheries Research, 91: 15-25
- Kftrack - Sibert, J.R., Musyl, M.K., Brill, R.W., 2003. Horizontal movements of bigeye tuna (Thunnus obesus) near Hawaii determined by Kalman filter analysis of archival tagging data. Fisheries Oceanography, 12(3):141-151.
Feel free to contact us at <[email protected]>
for any comments or questions, or leave us a comment on this site. We look forward to getting feedback and suggestions for any improvements to the on-going development.
Starter
Fundamentals
R-basics
Essentials
- Overview of KF geolocation packages
- Package details - Kftrack
- Kftrack parameters
- Package details - Kfsst
- Package details - Ukfsst
- Ukfsst parameters
- Package details - Trackit
- Trackit Parameters
Extras
- Extracting confidence intervals and regions
- Bathymetric correction with Analyzepsat
- Generating Utilization Distribution (UD)
- Feeding model results to a remote sensing data extraction routine
Others
Reference